Please, cite Martins et al. Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. BMC Bioinformatics 22, 1 (2021)

Explore
Search
- by Sequence
- by Binding Site
Clusters
Download
About

[CLICK ON COLUMN A
TO VISUALIZE THE COMPLEX HERE]

[CLICK ON COLUMN B
TO VISUALIZE THE COMPLEX HERE]

Cluster I46

Centroid: 1ook-P-B

Size: 13

Complex reference^?

Interface RMSD

Download complex

Advanced search

Processing...

A^?	B^?	Complex^?	Inteface RMSD (Å)^?	RMSD (Å)^?	Identity (%)^?	Similarity (%)^?

Laboratório de Bioinformática e Sistemas (LBS)

Universidade Federal de Minas Gerais
Av. Pres. Antônio Carlos, 6627 - Pampulha, Belo Horizonte - MG, 31270-901

Instituto de Ciências Exatas (ICEx), Departamento de Ciência da Computação (DCC)

Anexo U, 4º andar, Sala: 4340 | Telefone +55 31 3409-5896

Designed by:
MSc Pedro Martins
Dr. Lucianna H. Santos
Dr. Diego Mariano
Prof. Dr. Raquel de Melo-Minardi

Back-end:
MSc Pedro Martins

Front-end:
MSc Pedro Martins / Dr. Diego Mariano
Business vector created by freepik - www.freepik.com

Financing and support:
CAPES / UFMG / LBS

Search for similar sequences

Input sequence

Sequence cannot be empty!

Search sequence from

Peptides Proteins

Tutorial

Download

Structures

Complex

Receptor

Peptide

Interface

Sequences

Receptor

Peptide

0%

Search for similar binding sites

Search from PDB:

OR

Upload PDB

Loading sample: SARS-CoV-2 main protease (6lu7)

Protein chain select

Input residues id

Separated by comma (',')

Highlight residues surface

Search scope

Only CCD ^? Whole database ^?

PDB file and residue list cannot by empty!