School of Computer Science, Fudan University, Shanghai, China Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.|School of Computer Science, Fudan University, Shanghai, China Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.|School of Computer Science, Fudan University, Shanghai, China Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.|National Center for Mathematics and Interdisciplinary Sciences, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China.|Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan Department of Computer Science, Aalto University, Finland.|School of Computer Science, Fudan University, Shanghai, China Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China Centre for Computational System Biology, Fudan University, Shanghai, China.