Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.|Department of Infectious Disease Epidemiology, Imperial College London, London, UK.|Centre for Genomic Pathogen Surveillance, Wellcome Trust Genome Campus, Cambridge, UK.|Centre for Genomic Pathogen Surveillance, Wellcome Trust Genome Campus, Cambridge, UK.|Department of Infectious Disease Epidemiology, Imperial College London, London, UK.|Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.