Algorithms|Bacterial Outer Membrane Proteins|Base Pair Mismatch|Computational Biology|DNA|DNA Methylation|DNA Repair|DNA Restriction Enzymes|DNA-Binding Proteins|Escherichia coli|Escherichia coli Proteins|Genome, Bacterial|Models, Genetic|Phylogeny|Protein Structure, Tertiary|Site-Specific DNA-Methyltransferase (Adenine-Specific)