Department of Computer Engineering, Bilkent University, Ankara, Turkey.|Department of Computer Engineering, Bilkent University, Ankara, Turkey.|Tri-Institutional Program in Computational Biology and Medicine, New York, NY, USA.|Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA.|Marie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.|Marie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.